Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs58269521 chr17:74663258 G/T 1.08E-6 172 25.4 22.63 10.28 KM Plot
PCPG rs58291918 chr17:65798803 T/C 0.000381 176 24.5 36 8.22 KM Plot
PCPG rs58301703 chr2:136532225 G/A 3.13E-5 174 25.87 25.87 9.72 KM Plot
PCPG rs5833726 chr2:118534146 C/CT 1.57E-5 178 25 30.93 11.65 KM Plot
PCPG rs58381304 chr7:158680197 A/G 0 175 25.47 21.9 3.17 KM Plot
PCPG rs58382074 chr12:21624732 GGCTATT/G 3.9E-8 170 25.28 33.73 2.28 KM Plot
PCPG rs58385680 chr2:61558925 T/TA 0.000478 178 23.43 30.33 17.85 KM Plot
PCPG rs58441032 chr2:24309084 G/A 0.00011 178 25.28 26.92 17.43 KM Plot
PCPG rs5844450 chr22:21278844 GA/G 7.74E-5 177 12.93 31.47 25.2 KM Plot
PCPG rs584798 chr13:37505317 A/G 0.000352 177 6.37 24.85 25.7 KM Plot
PCPG rs58483454 chr1:40519353 A/T 0.000312 175 25.2 27.78 25.17 KM Plot
PCPG rs584873 chr1:36431806 C/A 0.000208 173 25.67 24.7 10.3 KM Plot
PCPG rs5848991 chr3:53528230 G/GA 0.000225 171 31.43 20.2 25.87 KM Plot
PCPG rs5852856 chr3:136668682 AT/A 0.000403 172 20.2 27.82 23.43 KM Plot
PCPG rs58534852 chr16:89975911 C/G 0.00018 174 25.87 20.28 3.17 KM Plot